Ran automated checker for common typos [1]. Most of these changes have
no functional change *except* for `./ci/sim_run.sh` where, previously
the `bootstrap` feature wasn't being selected properly.
I didn't touch anything in the `./ext/` folder as anything in there
should probably be fixed in the upstream repo.
[1] https://github.com/codespell-project/codespell
Signed-off-by: Sam Bristow <sam@bristow.nz>
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